COVID-19 - 14-day Decline
The President has suggested a re-opening plan based on states having a "14-day Decline ".
This application will help to see which states have accomplished that.
There are 2 basic ways the
COVID-19 data plotter.
can help see this.
- Use the Search feature to identify all the states meeting that criteria
- Look at each state individually and apply a Linear fit to the data
There is another, far more involved, method where you can
- Selected everything
- Manually filter out the main hot spot cities
- Then use the above 2 methods to see how the less infected (affected) parts of the states are doing
Since Georgia is in the news and the governor's decision is a bit controversial,
I will use that in the examples below.
Basic Setup
| Using the "Search" Functions
| Using "Least squares"
| Using Selected Counties
| Beaches
Basic Setup
Just some general instructions on how to see the data for a specific state.
- On the Map Data tab, select the US States - Confirmed dataset.
- Other datasets could be used, but this one provides a few extra options
- In the world map, zoom into an area near Georgia
- Use the mouse wheel to zoom - drag to center
- Click on the Georgia marker
- This will display the associated data in the Individual Plots window
Notice that the line is increasing in almost a straight line
- At the bottom of the Individual Plots window, click Display Daily Data
-
When cumulative data is increasing in a straight line, like this,
it could mean either
- There are still a lot of new cases, or
- There is just a lot of additional testing
or some combination of the two.
What is really needed is - the number of hospital admissions -
but we have to use the data we have.
At any rate, this is the basic configuration for the following examples.
Using the "Search" Functions
- Adjust the map (zoom and position) to show the continental US
- Access the Filters tab in the Controls window.
- On Filters tab
- Select Daily / Slope / is <=
- Set the Less Than or Equals value to zero
- Set the range to cover 2 weeks - for this example, use 79 to 93 (4/10/20 to 4/24/20)
- Click Clear All - all the markers will turn red
- Click Select - all the states meeting the criteria will turn green
Not bad, 16 states meet the criteria. Of course, American Samoa
doesn't really count since it has no confirmed cases.
If the range beginning is changed to 83 (see the next section),
then Georgia is added to the list.
Using "Least squares"
Least squares will fit a straight line to a series of points.
The application allows you to
- Select a series and
- Specify the range - start and end points
For this, the Individual Plots window needs to be in Display Daily data mode.
- In the Individual Plots window, right click the series name - Georgia
- This opens the Chart Properties dialog
- Drag the Ranges tab to create a new window
- In row 2, set the min/max to 79 and 93
- Position these 3 windows so that they can be seen at the same time
- Individual Plots, Chart Properties, Ranges
- In the Chart Properties dialog, click on the Series / Trends tab
- In this, select Least squares and Range 2
At this point, there should be a straight line on the Individual Plots graph.
It should be obvious that the slope is positive - thus Georgia fails the 2-week decline test.
Or does it?
It should be obvious that the result suffers from an end-point bias and, thus,
may not be valid.
Move the mouse cursor over the row 2 minimum value (currently 80)
in the Ranges window (don't bother clicking on it)
and move the mouse wheel.
You can see the trend line change as the end-point changes.
If the beginning date is 76 or 83, (18 days or 11 days) the slope is strongly negative.
But for exactly 14 days, it is positive.
So, does Georgia meet the criteria or not?
Don't forget - we don't know if the number of new cases is increasing
or if we are just testing more people.
Note: When the 04-25-20 data became available, Georgia passed the 14-day test.
Using Selected Counties
What if we remove a few specific hot spots -
perhaps only a few counties are skewing the average for everyone else.
For this we will use the US cities and counties dataset (option on the Map Data tab)
and the Aggregate Plots chart.
- Select the dataset and zoom the map such that the Georgia markers are centered and not overlapping
- Just so that we can see them
- Access the Filters tab in the Controls window
- Select Limit actions to a single state and your state of interest
- Click Select All
- Every county in Georgia should have a green marker
- On the Color Keys tab, select Total Count
- This indicates the cumulative number of cases on the selected date
This date is controlled via the slider and other animation controls
The light blue colors indicate the hot-spots.
To manually remove them from the selection, click on them, one at a time, while holding down the shift key.
(This assumes that the radio buttons under the map are set to add and single.)
These could have also been removed by using a filter.
I removed 6 light blue markers.
In the Individual Plots window you can see the data for the counties you just removed.
When in single mode, each time you click on a marker its data is added to this plot.
The checkboxes can be used to hide individual series.
The fact that they are so similar (the peaks and troughs line up) indicates, to me,
that these are caused by the way the data is reported and not by some underlying
way that people are getting sick.
This is a very strong indication that end-point-bias should produce questionable results.
- In the Aggregate Plots window, click New Plot
- At the bottom of this window, click Display Daily Data
Now, we will repeat the trend line analysis we did in the previous section ..
but on just this sub-sample.
- Right click the series
- Open Ranges in a separate window and set the range
- Select Least Squares and Range 2 on the Trends tab
For a comparison, press Select All (below the map or on the Filters tab) and Add Series (below the plot).
This is 04-24-20 data - it changes every day
11670 / 21128 = 55.2% are not in the 6 selected counties
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So, at about 800 new cases a day and a fairly flat change over the selected time period,
is Georgia ready to reopen?
Based on this - probably not, but hospital admissions would probably be a better indicator.
Deaths are the next best indicator since improved treatments will be automatically incorporated.
The statewide results are similar.
Using the filters this time, only 9 Georgia counties have
total deaths over 20. (One is over a hundred.)
- First, select all the Georgia sites
- Use the filter the deselect sites with a cumulative maximum greater than 20.
- Produce an Aggregate plot
- Do an analysis as before
This is also very similar to the other trends. Based on this,
and the fact that a few days reported zero deaths after a one-day spike with almost 100 deaths,
Yes, Georgia has this under control. Twenty a day is still a lot,
but since there are 159 counties, many appear to be ready to open for business.
Of course, further analysis will indicate that several should NOT reopen,
but most in a fairly rural state are in good shape.
Note: 50 counties have zero deaths, but only 2 have zero cases.
Beaches
Another current (25 April 2020) controversy is about opening beaches in Florida.
Well Jacksonville beach (Duval county) opened about a week ago.
The rules are simple, no laying on the beach, no gathering in groups,
keep moving, and keep your distance.
This link
displays info for Duval - they have had significant decreases for 3 weeks.
4/25/20 Duval, Florida, US
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965 confirmed 18 deaths
This is a rate of 100.7 per 100,000, or about 0.1%.
Peak on 04-02-20 - 22 days, 3 weeks+, ago
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I don't see a problem with this. Phrased another way - If this IS a problem, then nothing should open.
Author:
Robert Clemenzi